Ok i just got on very quickly made for you
Ok well basicly this is for Counter Strike 1.6, in this mod file it has Customer Command line all configured, Mods, Patches, Game Updates, Secondry Apps, Scripts all in you will have to do the following to get the Mods Patches Game Updates to work.
In your file server or game file locations you have to have a folder for counter strike 1.6 ie i have called my folder "cs" ok this is what i have done to get the Mods Patches and Game Updates to work.
i created these directorys
/cs/TCA.Mods for mods
/cs/TCA.Maps for map packs
/cs/TCA.Patches for Updates
so for example
/cs/TCA.Mods/amxmodxcs.zip
thats what i did for the amx mod x
For the secondary apps thats pritty simple what i did was make a HLTV game and created the server files for it and you just add them in the config in counterstrike 1.6
Once you get this far you will basicly figure everything out
Lee if you need any help give me a bell Counter Strike 1.6.xml