Blank installations of games and config's aren't guaranteed to work, they're a starting reference. There's "Settings" for each game, and how you run your servers(YEs, thy can be done multiple different ways, everything from not using Battleye, to placement of configs, and commandline options....MOD installations, there's too many varying factors to be able to know why your server isn't starting correctly. RPT, commandline, share some more information at the very least, as anyone trying to actually help will need info on your server's configuration
GL